On-Line Applications

This page provides links to various molecular sequencing and analysis tools.

• Blast
• Wu-Blast
• Fasta

• PROSITE
• BLOCKS
• PRINTS
• ProDom
• Pfam

• ExPASy Proteomics tools
• EMBL Database searching, browsing and analysis tools
• BCM Search Launcher - Multiple Sequence Alignments
• GCG Wisconsin Package
• Divide and Conquer - Multiple Sequence Alignment
• Dialign - Pairwise Sequence Alignment
• ProteinPredict
• GeneDoc
• ClustalX
• Molecular Toolkit
• CMS Molecular Biology Resource
• SAPS - Statistical Analysis of Protein Sequences
• PatScan - Pattern Scanning
• Dotter - Graphical dotplot for comparing two sequences
• Biology WorkBench
• Locus Link

• BMERC - Boston University Protein Sequence Analysis
• SAM - UC Santa Cruz sequence alignment and modeling system)
• NIH Molecular Modeling Home Page

• Tree-Puzzle
• SplitsTree
• Random Model of Sequence Evolution
• The Tree of Life
• Codon Usage Tables